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| Publication Date | Article Title | Author(s) |
| 2011 | Accurate quantification of functional analogy among close homologs | Chikina, Maria D; Troyanskaya, Olga G |
| 1-May-2022 | An analytical framework for interpretable and generalizable single-cell data analysis | Zhou, Jian; Troyanskaya, Olga G |
| 27-Feb-2019 | A Computational Framework for Genome-wide Characterization of the Human Disease Landscape | Lee, Young-Suk; Krishnan, Arjun; Oughtred, Rose; Rust, Jennifer; Chang, Christie S; et al |
| 2017 | Data-driven analysis of immune infiltrate in a large cohort of breast cancer and its association with disease progression, ER activity, and genomic complexity | Dannenfelser, Ruth; Nome, Marianne; Tahiri, Andliena; Ursini-Siegel, Josie; Vollan, Hans K M; et al |
| 2018 | Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk | Zhou, Jian; Theesfeld, Chandra L; Yao, Kevin; Chen, Kathleen M; Wong, Aaron K; et al |
| 2014 | Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction | Zhou, Jian; Troyanskaya, Olga G |
| 2013 | Defining cell-type specificity at the transcriptional level in human disease | Ju, Wenjun; Greene, Casey S; Eichinger, Felix; Nair, Viji; Hodgin, Jeffrey B; et al |
| Sep-2018 | Enabling Precision Medicine through Integrative Network Models | Yao, Victoria; Wong, Aaron K; Troyanskaya, Olga G |
| 14-Mar-2013 | Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes | Park, Christopher Y; Wong, Aaron K; Greene, Casey S; Rowland, Jessica; Guan, Yuanfang; et al |
| Jul-2018 | GIANT 2.0: genome-scale integrated analysis of gene networks in tissues | Wong, Aaron K; Krishnan, Arjun; Troyanskaya, Olga G |
| 21-Aug-2020 | Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development | Ledo, Jose Henrique; Zhang, Ran; Mesin, Luka; Mourão-Sá, Diego; Azevedo, Estefania P; et al |
| 2020 | Mapping the physiological and molecular markers of stress and SSRI antidepressant treatment in S100a10 corticostriatal neurons | Sargin, Derya; Chottekalapanda, Revathy U; Perit, Kristina E; Yao, Victoria; Chu, Duong; et al |
| Jan-2019 | Minor Isozymes Tailor Yeast Metabolism to Carbon Availability. | Bradley, Patrick H; Gibney, Patrick A; Botstein, David; Troyanskaya, Olga G; Rabinowitz, Joshua D |
| 23-Dec-2020 | Modeling molecular development of breast cancer in canine mammary tumors | Graim, Kiley; Gorenshteyn, Dmitriy; Robinson, David G; Carriero, Nicholas J; Cahill, James A; et al |
| 10-Jan-2019 | Organoid single cell profiling identifies a transcriptional signature of glomerular disease | Harder, Jennifer L; Menon, Rajasree; Otto, Edgar A; Zhou, Jian; Eddy, Sean; et al |
| 2011 | PILGRM: An interactive data-driven discovery platform for expert biologists | Greene, CS; Troyanskaya, Olga G |
| 2020 | Presenilin 1 phosphorylation regulates amyloid-β degradation by microglia | Ledo, Jose Henrique; Liebmann, Thomas; Zhang, Ran; Chang, Jerry C; Azevedo, Estefania P; et al |
| Jul-2020 | RNA Identification of PRIME Cells Predicting Rheumatoid Arthritis Flares | Orange, Dana E; Yao, Vicky; Sawicka, Kirsty; Fak, John; Frank, Mayu O; et al |
| 2020 | SARS-CoV-2 receptor networks in diabetic and COVID-19–associated kidney disease | Menon, Rajasree; Otto, Edgar A; Sealfon, Rachel; Nair, Viji; Wong, Aaron K; et al |
| Sep-2020 | Selective Neuronal Vulnerability in Alzheimer’s Disease: A Network-Based Analysis | Roussarie, Jean-Pierre; Yao, Vicky; Rodriguez-Rodriguez, Patricia; Oughtred, Rose; Rust, Jennifer; et al |
