Showing results 7 to 23 of 23
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| Publication Date | Article Title | Author(s) |
| Oct-2016 | Gene and Network Analysis of Common Variants Reveals Novel Associations in Multiple Complex Diseases. | Nakka, Priyanka; Raphael, Benjamin J; Ramachandran, Sohini |
| Jul-2018 | Haplotype phasing in single-cell DNA-sequencing data. | Satas, Gryte; Raphael, Benjamin J |
| Sep-2018 | Hierarchical HotNet: identifying hierarchies of altered subnetworks. | Reyna, Matthew A; Leiserson, Mark DM; Raphael, Benjamin J |
| Jan-2018 | Identifying simultaneous rearrangements in cancer genomes. | Oesper, Layla; Dantas, Simone; Raphael, Benjamin J |
| Jan-2018 | Identifying structural variants using linked-read sequencing data. | Elyanow, Rebecca; Wu, Hsin-Ta; Raphael, Benjamin J |
| Jul-2020 | Identifying tumor clones in sparse single-cell mutation data. | Myers, Matthew A; Zaccaria, Simone; Raphael, Benjamin J |
| 2022 | A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements | Simonaitis, Pijus; Raphael, Benjamin J |
| Feb-2020 | netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis. | Elyanow, Rebecca; Dumitrascu, Bianca; Engelhardt, Barbara E; Raphael, Benjamin J |
| Oct-2017 | Novel Gene and Network Associations Found for Acute Lymphoblastic Leukemia Using Case-Control and Family-Based Studies in Multiethnic Populations. | Nakka, Priyanka; Archer, Natalie P; Xu, Heng; Lupo, Philip J; Raphael, Benjamin J; et al |
| 5-Feb-2020 | Pathway and network analysis of more than 2500 whole cancer genomes | Reyna, Matthew A; Haan, David; Paczkowska, Marta; Verbeke, Lieven P C; Vazquez, Miguel; et al |
| 1-Jan-2019 | Random walks on hypergraphs with edge-dependent vertex weights | Chitra, U; Raphael, Benjamin J |
| 4-Sep-2020 | Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples. | Aganezov, Sergey; Raphael, Benjamin J |
| Apr-2020 | SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses. | Satas, Gryte; Zaccaria, Simone; Mon, Geoffrey; Raphael, Benjamin J |
| 1-Jan-2020 | Single-cell tumor phylogeny inference with copy-number constrained mutation losses | Satas, G; Zaccaria, S; Mon, G; Raphael, Benjamin J |
| Jul-2017 | Tumor phylogeny inference using tree-constrained importance sampling. | Satas, Gryte; Raphael, Benjamin J |
| 14-Sep-2018 | Using controls to limit false discovery in the era of big data. | Parks, Matthew M; Raphael, Benjamin J; Lawrence, Charles E |
| Jun-2018 | Visible Machine Learning for Biomedicine. | Yu, Michael K; Ma, Jianzhu; Fisher, Jasmin; Kreisberg, Jason F; Raphael, Benjamin J; et al |
